WBPaper00054796:cav-1(RNAi)_upregulated

DESeq2 from R 3.2.1, adjusted p-value < 0.1 Transcripts that showed significantly increased expression in cav-1(RNAi) comparing to control RNAi animals.

WBPaper00054796:cav-1(RNAi)_downregulated

DESeq2 from R 3.2.1, adjusted p-value < 0.1 Transcripts that showed significantly decreased expression in cav-1(RNAi) comparing to control RNAi animals.

WBPaper00054872:egl-9(sa307)_upregulated

Bioconductor's edgeR package in the R 3.2.3, adjusted p value < 0.05. Transcripts with significantly increased expression in egl-9(sa307) comparing to in N2.

WBPaper00054872:egl-9(sa307)_downregulated

Bioconductor's edgeR package in the R 3.2.3, adjusted p value < 0.05. Transcripts with significantly decreased expression in egl-9(sa307) comparing to in N2.

WBPaper00064871:P.fluorescens_downregulated_AWA

P values are derived from two-sided exact test used in the R package edgeR and the FDR values are BenjaminiHochberg adjusted P values. FDR < 0.05 (set by WormBase Curator). Transcripts differentially expressed between AWA neurons of adult hermaphrodite worms exposed to P. fluorescens and AWA neurons of adult hermaphrodite worms exposed to OP50 for 4-6 hours.

WBPaper00064871:P.fluorescens_upregulated_AWA

P values are derived from two-sided exact test used in the R package edgeR and the FDR values are BenjaminiHochberg adjusted P values. FDR < 0.05 (set by WormBase Curator). Transcripts differentially expressed between AWA neurons of adult hermaphrodite worms exposed to P. fluorescens and AWA neurons of adult hermaphrodite worms exposed to OP50 for 4-6 hours.

WBPaper00064939:vit-5(RNAi)_upregulated

DESeq R package (1.18.0), P < 0.05 and fold change > 2 Transcripts that showed significantly increased expression in vit-5(RNAi) comparing to in N2 animals injected with empty vector.

WBPaper00064939:vit-5(RNAi)_downregulated

DESeq R package (1.18.0), P < 0.05 and fold change > 2 Transcripts that showed significantly decreased expression in vit-5(RNAi) comparing to in N2 animals injected with empty vector.

WBPaper00032062:age_regulated_genes

ANOVA, p < 0.0001. Genes that showed significantly changed expression during aging (ANOVA, p < 0.0001)

WBPaper00062184:PA14_downregulated

DESeq R package (1.18.0), FDR < 0.05 and fold change > 2. Transcripts that showed significantly decreased expression after N2 L4 animals were infected by P. aeruginosa (PA14) bacteria for 24 hours at 25C.