WBPaper00062684:pathogen_downregulated_N2

DESeq2 (v.3.1.0), adjusted P-value < 0.05 and fold change >= 2. Transcripts in N2 animals that showed significantly decreased expression across all pathogens (S. epidermidis, P. rettgeri, P. aeruginosa, or S. aureus vs. OP50)

WBPaper00062684:pathogen_upregulated_N2

DESeq2 (v.3.1.0), adjusted P-value < 0.05 and fold change >= 2. Transcripts in N2 animals that showed significantly increased expression across all pathogens (S. epidermidis, P. rettgeri, P. aeruginosa, or S. aureus vs. OP50)

WBPaper00062684:pathogen_downregulated_CB4856

DESeq2 (v.3.1.0), adjusted P-value < 0.05 and fold change >= 2. Transcripts in CB4856 animals that showed significantly decreased expression across all pathogens (S. epidermidis, P. rettgeri, P. aeruginosa, or S. aureus vs. OP50)

WBPaper00062684:pathogen_upregulated_CB4856

DESeq2 (v.3.1.0), adjusted P-value < 0.05 and fold change >= 2. Transcripts in CB4856 animals that showed significantly increased expression across all pathogens (S. epidermidis, P. rettgeri, P. aeruginosa, or S. aureus vs. OP50)

WBPaper00051069:isp-1(qm150)_downregulated

Differential gene expression analysis was performed using the edgeR package v. 3.14.0 in R v.3.3.0. (q < 0.05). Transcripts that showed significantly decreased expression in isp-1(qm150) comparing to in N2.

WBPaper00051069:isp-1(qm150)_upregulated

Differential gene expression analysis was performed using the edgeR package v. 3.14.0 in R v.3.3.0. (q < 0.05). Transcripts that showed significantly increased expression in isp-1(qm150) comparing to in N2.

WBPaper00053810:nuo-6(qm200)_upregulated

Differential gene expression analysis was performed using the quasi-likeli-hood framework in edgeR package v. 3.20.1 in R v. 3.4.1. Transcripts that showed significantly increased expression in nuo-6(qm200) comparing to in N2.

WBPaper00053810:sod-2(ok1030)_downregulated

Differential gene expression analysis was performed using the quasi-likeli-hood framework in edgeR package v. 3.20.1 in R v. 3.4.1. Transcripts that showed significantly decreased expression in sod-2(ok1030), comparing to in N2.

WBPaper00053810:daf-2(e1370)_upregulated

Differential gene expression analysis was performed using the quasi-likeli-hood framework in edgeR package v. 3.20.1 in R v. 3.4.1. Transcripts that showed significantly increased expression in daf-2(e1370) comparing to in N2.

WBPaper00053810:daf-2(e1370)_downregulated

Differential gene expression analysis was performed using the quasi-likeli-hood framework in edgeR package v. 3.20.1 in R v. 3.4.1. Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2.