- WBPaper00041506:P3_enriched
t-test with p-value < 0.05 (FDR corrected)
Transcripts enriched in emrbyonic P3 cell comparing to in C, according to single cell RNAseq.
- WBPaper00041506:C_enriched
t-test with p-value < 0.05 (FDR corrected)
Transcripts enriched in emrbyonic C cell comparing to in P3, according to single cell RNAseq.
- WBPaper00062684:pathogen_upregulated_N2
DESeq2 (v.3.1.0), adjusted P-value < 0.05 and fold change >= 2.
Transcripts in N2 animals that showed significantly increased expression across all pathogens (S. epidermidis, P. rettgeri, P. aeruginosa, or S. aureus vs. OP50)
- WBPaper00062684:pathogen_downregulated_CB4856
DESeq2 (v.3.1.0), adjusted P-value < 0.05 and fold change >= 2.
Transcripts in CB4856 animals that showed significantly decreased expression across all pathogens (S. epidermidis, P. rettgeri, P. aeruginosa, or S. aureus vs. OP50)
- WBPaper00062684:pathogen_upregulated_CB4856
DESeq2 (v.3.1.0), adjusted P-value < 0.05 and fold change >= 2.
Transcripts in CB4856 animals that showed significantly increased expression across all pathogens (S. epidermidis, P. rettgeri, P. aeruginosa, or S. aureus vs. OP50)
- WBPaper00062684:pathogen_downregulated_N2
DESeq2 (v.3.1.0), adjusted P-value < 0.05 and fold change >= 2.
Transcripts in N2 animals that showed significantly decreased expression across all pathogens (S. epidermidis, P. rettgeri, P. aeruginosa, or S. aureus vs. OP50)
- WBPaper00061393:C.albicans_regulated
Fold change >= 2 and p <= 0.05. Only the top 29 genes are shown here.
Top 29 transcripts that showed significantly altered expression after C. albicans infection.
- WBPaper00059754:C.neoformans_H99_upregulated
Ballgown was used to calculate differential expression of genes using FPKM data and to generate tables with fold change and P values. Genes were shortlisted with a cutoff of 2-fold change and P values of less than 0.05.
Transcripts that showed significantly increased expression after infection by C. neoformans H99.