WBPaper00052885:hrde-1(tm1200)-emb-4(qm31)_regulated

DESeq2 v3.2.2 Transcripts that showed differential expression in hrde-1(tm1200) as well as in emb-4(qm31), comparing to in N2.

WBPaper00028789:PA14_vs_OP50_upregulated_4hr

At least 2 fold and P < 0.01, as determined by a t-test. Genes upregulated in worms grown on P. aeruginosa PA14 as compared to worms grown on OP50 for 4 hours by at least 2 fold and P < 0.01, as determined by a t-test.

WBPaper00028789:PA14_vs_OP50_downregulated_4hr

At least 2 fold and P < 0.01, as determined by a t-test. Genes downregulated in worms grown on P. aeruginosa PA14 as compared to worms grown on OP50 for 4 hours by at least 2 fold and P < 0.01, as determined by a t-test.

WBPaper00028789:PA14_vs_OP50_downregulated_8hr

At least 2 fold and P < 0.01, as determined by a t-test. Genes downregulated in worms grown on P. aeruginosa PA14 as compared to worms grown on OP50 for 8 hours by at least 2 fold and P < 0.01, as determined by a t-test.

WBPaper00028789:PA14_vs_OP50_upregulated_8hr

At least 2 fold and P < 0.01, as determined by a t-test. Genes upregulated in worms grown on P. aeruginosa PA14 as compared to worms grown on OP50 for 8 hours by at least 2 fold and P < 0.01, as determined by a t-test.

WBPaper00037849:sam-10(js94)_upregulated

Geometric mean=1.5 is used as a cutoff. Genes with increased expression in sam-10(js94) mutants, revealed by microarray analysis. Geometric mean=1.5 is used as a cutoff.

WBPaper00028789:pmk-1_downregulated

At least 2 fold and P < 0.01, as determined by a t-test. Genes downregulated by wild-type pmk-1 (upregulated in daf-2(e1368);pmk-1(km25) strain as compared to daf-2(e1368) strain) by at least 2 fold and P < 0.01, as determined by a t-test.

WBPaper00028789:pmk-1_upregulated

At least 2 fold and P < 0.01, as determined by a t-test. Genes upregulated by wild-type pmk-1 (downregulated in daf-2(e1368);pmk-1(km25) strain as compared to daf-2(e1368) strain) by at least 2 fold and P < 0.01, as determined by a t-test.

WBPaper00037047:aging_accelerated_insoluble_protein

N.A. Proteins that become 1.5 fold or more insoluble as animals age.

WBPaper00028789:PA14_vs_gacA_downregulated_4hr

At least 2 fold and P < 0.01, as determined by a t-test. Genes downregulated in worms grown on wild-type P. aeruginosa PA14 as compared to worms grown on an isogenic PA14 mutant gacA for 4 hours by at least 2 fold and P < 0.01, as determined by a t-test.