- WBPaper00031850:mdt-15(RNAi)_downregulated
Author used empirical Bayes fitting in limma with multiple hypothesis correction method BH, and considered genes with a P-value < 0.05 to be differentially expressed.
Genes downregulated in mdt-15(RNAi) animals comparing with control.
- WBPaper00031850:mdt-15(RNAi)_upregulated
Author used empirical Bayes fitting in limma with multiple hypothesis correction method BH, and considered genes with a P-value < 0.05 to be differentially expressed.
Genes upregulated in mdt-15(RNAi) animals comparing with control.
- WBPaper00060871:M.humicola-infection_12h_regulated
Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1).
Transcripts that showed significantly altered expression 12 hours after animals were infected by M. humicola.
- WBPaper00060871:M.humicola-infection_24h_regulated
Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1).
Transcripts that showed significantly altered expression 24 hours after animals were infected by M. humicola.
- WBPaper00060871:M.humicola-infection_48h_regulated
Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1).
Transcripts that showed significantly altered expression 48 hours after animals were infected by M. humicola.
- WBPaper00060871:M.humicola-extract_24h_regulated
Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1).
Transcripts that showed significantly altered expression 24 hours after animals were exposed to M. humicola extract.
- WBPaper00060871:M.humicola-extract_12h_regulated
Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1).
Transcripts that showed significantly altered expression 12 hours after animals were exposed to M. humicola extract.
- WBPaper00060871:M.humicola-extract_1h_regulated
Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1).
Transcripts that showed significantly altered expression one hour after animals were exposed to M. humicola extract.
- WBPaper00060871:M.humicola-extract_4h_regulated
Differentially expressed genes as determined by Kallisto and Sleuth (pval<0.01, qval<0.1).
Transcripts that showed significantly altered expression 4 hours after animals were exposed to M. humicola extract.
- [cgc6390]:oogenesis-enriched
Comparisons were made between genotypes by subtracting the mean log value of one ratio from another, and the significance of the difference was evaluated using Student t-test for two populations. For the fem-3(gf) versus fem-1(lf) direct comparison, authors performed the same analysis, except they used a Students t-test for one population. Author chose a combination of a twofold difference with a t value exceeding 99% confidence (P < 0.01), because these criteria allowed the inclusion of essentially all genes that had previously been identified as germline-enriched in a wt/glp-4 hermaphrodite comparison. Additionally, requiring a twofold difference reduced false positives, as the number of genes with two-fold difference and a P<0.01 only included ~100 genes more than with P < 0.001, and almost all genes showed germline expression by in situ hybridization.
oogenesis-enriched