- WBPaper00049417:B.animalis_upregulated
The difference between treated samples and controls was statistically tested using limma moderate t-statistic. Aiming to control the false disocvery rate, p-values were corrected for multiple testing using Benjamini and Hochberg method.
First 40 of the 296 significantly over induced genes (P <= 0.05) in C. elegans treated with B. animalis sbsp. lactis CECT 8145 strain.
- WBPaper00040990:PA14_downregulated
Gene expression profiles obtained with microarrays were analyzed by a multi-class t-test using Significance Analysis of Microarrays (SAM), implemented as part of the TMEV software package. Based on T statistics the test retrieves genes with a T value above a cutoff score estimated to give the desired false discovery rate (selected to be 10%).
Genes with expression level repressed by bacteria strain PA14.
- WBPaper00040990:PA14_upregulated
Gene expression profiles obtained with microarrays were analyzed by a multi-class t-test using Significance Analysis of Microarrays (SAM), implemented as part of the TMEV software package. Based on T statistics the test retrieves genes with a T value above a cutoff score estimated to give the desired false discovery rate (selected to be 10%).
Genes with expression level induced by bacteria strain PA14.
- [cgc6390]:Cluster_B
hierarchical clustering
Germline-enriched and sex-biased expression profile cluster B.