- WBPaper00061651:DA_enriched
Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched.
Transcripts enriched in DA according to single cell RNAseq.
- WBPaper00065560:E.coli-HB101_downregulated_F3
Differentially expressed genes were extracted using DESeq, version 1.10.1. Assembly: PRJNA13758.WBPS13
Transcripts downregulated in F3 generation of transgenic C. elegans expressing human alpha-syn in DA neurons fed HB101 0E. coli vs. OP50.
- WBPaper00065560:E.coli-HB101_upregulated_P0
Differentially expressed genes were extracted using DESeq, version 1.10.1. Assembly: PRJNA13758.WBPS13
Transcripts upregulated in P0 generation of transgenic C. elegans expressing human alpha-syn in DA neurons fed HB101 0E. coli vs. OP50.
- WBPaper00065560:E.coli-HB101_upregulated_F3
Differentially expressed genes were extracted using DESeq, version 1.10.1. Assembly: PRJNA13758.WBPS13
Transcripts upregulated in F3 generation of transgenic C. elegans expressing human alpha-syn in DA neurons fed HB101 0E. coli vs. OP50.
- WBPaper00065560:E.coli-HB101_downregulated_P0
Differentially expressed genes were extracted using DESeq, version 1.10.1. Assembly: PRJNA13758.WBPS13
Transcripts downregulated in P0 generation of transgenic C. elegans expressing human alpha-syn in DA neurons fed HB101 0E. coli vs. OP50.
- WBPaper00050514:CEBP-1_interacting
CHIP-seq. Authors conducted peak calling using a CLC Genomics Workbench 6.0.
Transcripts physically interacting with CEBP-1 protein, according to CHIP-Seq analysis by immunoprecipitating FLAG-CEBP-1-associated withh DA fragments using anti-FLAG antibody.
- WBPaper00053388:dauer_regulated_Cluster5
Benjamini Hochberg corrected q-value < 0.01.
Transcripts that showed differential expression between 24 and 26 hours post hatching L2d and dauer committed larvae of daf-9(dh6), triggered by the dafachronic acid (DA) growth hormone. Cluster 5 genes decreased expression after dauer commitment.
- WBPaper00053388:dauer_regulated_Cluster6
Benjamini Hochberg corrected q-value < 0.01.
Transcripts that showed differential expression between 24 and 26 hours post hatching L2d and dauer committed larvae of daf-9(dh6), triggered by the dafachronic acid (DA) growth hormone. Cluster 6 genes increased expression in L4.
- WBPaper00053388:dauer_regulated_Cluster1
Benjamini Hochberg corrected q-value < 0.01.
Transcripts that showed differential expression between 24 and 26 hours post hatching L2d and dauer committed larvae of daf-9(dh6), triggered by the dafachronic acid (DA) growth hormone. The expression levels of Cluster 1 gradually decreased into dauer.
- WBPaper00053388:dauer_regulated_Cluster2
Benjamini Hochberg corrected q-value < 0.01.
Transcripts that showed differential expression between 24 and 26 hours post hatching L2d and dauer committed larvae of daf-9(dh, triggered by the dafachronic acid (DA) growth hormone6). Cluster 2 genes' expression gradually increased into dauer.