- WBPaper00064637:cox-5B(RNAi)_upregulated
LimmaVoom. The genes with a BenjaminiHochbergadjusted P value < 0.05 were defined as statistically significant. Genes whose expressions were significantly upregulated with log2FC > 0.393.
Transcripts that showed significantly increased expression in cco-1/cox-5B(RNAi) animals comparings to animals injected with vector control.
- WBPaper00050094:glp-1(gf)_downregulated
Fold change > 2.
Transcripts that showed significantly decreased expression in the dissected gonads of gld-2(q492) gld-1(q485) (I); glp-1(ar202)(III) (glp-1(gf) NOTCH ON), comparing to in the dissected gonads of gld-2(q492) gld-1(q485) (I); glp-1(e2144) (glp-1(lf) NOTCH OFF)
- WBPaper00050094:glp-1(gf)_upregulated
Fold change > 2.
Transcripts that showed significantly increased expression in the dissected gonads of gld-2(q492) gld-1(q485) (I); glp-1(ar202)(III) (glp-1(gf) NOTCH ON), comparing to in the dissected gonads of gld-2(q492) gld-1(q485) (I); glp-1(e2144) (glp-1(lf) NOTCH OFF)
- WBPaper00038421:egl-4(lf)_upregulated
Data was analyzed using the R statistical environment. CEL files resulting from array analysis were interpreted and normalized using RMA. The linear modeling package Limma was used to determine significant gene expression differences based on a moderated t-statistic.
Top 10 differentially expressed genes with expression repressed in egl-4(gf) and activated in egl-4(lf) animals.
- WBPaper00066447:Day8_vs_Day1_downregulated_coelomocyte
Differentially expressed miRNAs were identified using DEGseq based on unique molecular identifier (UMI). A minimum UMI sum of 10 in 3 replicates was set as the threshold of expression. MiRNAs with more than five reads were defined as expressed. Differential expression of miRNAs was analysed by t-test (P value < 0.05 and fold-change > 1.5 or < 0.67) after Box-Cox transformation. MiRNA targets were identified by TargetScanWorm (Release 6.2) and Pearson Correlation Coefficient smaller than -0.2.
Micro RNAs that showed significantly decreased expression in day 8 adults comparing to in day 1 adults in coelomocyte.
- WBPaper00066447:Day8_vs_Day1_downregulated_intestine
Differentially expressed miRNAs were identified using DEGseq based on unique molecular identifier (UMI). A minimum UMI sum of 10 in 3 replicates was set as the threshold of expression. MiRNAs with more than five reads were defined as expressed. Differential expression of miRNAs was analysed by t-test (P value < 0.05 and fold-change > 1.5 or < 0.67) after Box-Cox transformation. MiRNA targets were identified by TargetScanWorm (Release 6.2) and Pearson Correlation Coefficient smaller than -0.2.
Micro RNAs that showed significantly decreased expression in day 8 adults comparing to in day 1 adults in intestine.
- WBPaper00066447:Day8_vs_Day1_upregulated_intestine
Differentially expressed miRNAs were identified using DEGseq based on unique molecular identifier (UMI). A minimum UMI sum of 10 in 3 replicates was set as the threshold of expression. MiRNAs with more than five reads were defined as expressed. Differential expression of miRNAs was analysed by t-test (P value < 0.05 and fold-change > 1.5 or < 0.67) after Box-Cox transformation. MiRNA targets were identified by TargetScanWorm (Release 6.2) and Pearson Correlation Coefficient smaller than -0.2.
Micro RNAs that showed significantly increased expression in day 8 adults comparing to in day 1 adults in intestine.
- WBPaper00066447:Day8_vs_Day1_upregulated_hypodermis
Differentially expressed miRNAs were identified using DEGseq based on unique molecular identifier (UMI). A minimum UMI sum of 10 in 3 replicates was set as the threshold of expression. MiRNAs with more than five reads were defined as expressed. Differential expression of miRNAs was analysed by t-test (P value < 0.05 and fold-change > 1.5 or < 0.67) after Box-Cox transformation. MiRNA targets were identified by TargetScanWorm (Release 6.2) and Pearson Correlation Coefficient smaller than -0.2.
Micro RNAs that showed significantly increased expression in day 8 adults comparing to in day 1 adults in hypodermis.
- WBPaper00066447:Day8_vs_Day1_upregulated_neuron
Differentially expressed miRNAs were identified using DEGseq based on unique molecular identifier (UMI). A minimum UMI sum of 10 in 3 replicates was set as the threshold of expression. MiRNAs with more than five reads were defined as expressed. Differential expression of miRNAs was analysed by t-test (P value < 0.05 and fold-change > 1.5 or < 0.67) after Box-Cox transformation. MiRNA targets were identified by TargetScanWorm (Release 6.2) and Pearson Correlation Coefficient smaller than -0.2.
Micro RNAs that showed significantly increased expression in day 8 adults comparing to in day 1 adults in neuron.
- WBPaper00066447:Day8_vs_Day1_downregulated_neuron
Differentially expressed miRNAs were identified using DEGseq based on unique molecular identifier (UMI). A minimum UMI sum of 10 in 3 replicates was set as the threshold of expression. MiRNAs with more than five reads were defined as expressed. Differential expression of miRNAs was analysed by t-test (P value < 0.05 and fold-change > 1.5 or < 0.67) after Box-Cox transformation. MiRNA targets were identified by TargetScanWorm (Release 6.2) and Pearson Correlation Coefficient smaller than -0.2.
Micro RNAs that showed significantly decreased expression in day 8 adults comparing to in day 1 adults in neuron.