- WBPaper00051304:CEH-23_repressed
Identified by 1 class SAM with FDR=0.59, 1.5 fold gene cutoff.
Transcripts that were repressed by CEH-23 by comparing expression between isp-1(qm150) and ceh-23(ms23);isp-1(qm150).
- WBPaper00051304:CEH-23_activating
Identified by 1 class SAM with FDR=0.59, 1.5 fold gene cutoff.
Transcripts that were activated by CEH-23 by comparing expression between isp-1(qm150) and ceh-23(ms23);isp-1(qm150).
- WBPaper00028789:pmk-1_upregulated
At least 2 fold and P < 0.01, as determined by a t-test.
Genes upregulated by wild-type pmk-1 (downregulated in daf-2(e1368);pmk-1(km25) strain as compared to daf-2(e1368) strain) by at least 2 fold and P < 0.01, as determined by a t-test.
- WBPaper00028789:pmk-1_downregulated
At least 2 fold and P < 0.01, as determined by a t-test.
Genes downregulated by wild-type pmk-1 (upregulated in daf-2(e1368);pmk-1(km25) strain as compared to daf-2(e1368) strain) by at least 2 fold and P < 0.01, as determined by a t-test.
- WBPaper00055334:DLC-1_interacting
DESeq2, fold change > 2,, p-value < 0.01
Transcripts that interact with 3xFLAG-DLC-1 as identified by immunoprecipitation followed by RNA sequencing.
- WBPaper00059027:neuron-synapses_enriched
DESeq2, FDR < 0.05
Transcripts enriched at neuron synapses by comparing presynaptic and somatic cell fragments labeled with different protein markers and sorted by FACS.