- WBPaper00065623:81
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 81 expressed in: BAG.
- WBPaper00065623:36
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 36 expressed in: Spermatheca bag proximal.
- WBPaper00065623:98
CellRanger, DecontX, Monocle3, Louvain algorithm.
Single-cell RNA-Seq cell group 98 expressed in: Spermatheca bag distal.
- WBPaper00061651:BAG_enriched
Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched.
Transcripts enriched in BAG according to single cell RNAseq.
- WBPaper00061902:camt-1(ok515)_regulated_BAG
RNA-seq data were mapped using PRAGUI - a Python 3-based pipeline for RNA-seq data analysis.
Transcripts that showed significantly altered expression at BAG neurons in camt-1(ok515) animals comparing to in wild type AX1888-1 strain.
- WBPaper00061340:Ciliated_non_amphid_neuron
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm.
Top 300 transcripts enriched in ADE, AQR, BAG, CEP, FLP, IL1 neuron, IL2 neuron, OLL, OLQ, PDE, PHA, PHB, PQR, PVR according to single cell RNAseq.
- WBPaper00062684:pathogen_downregulated_N2
DESeq2 (v.3.1.0), adjusted P-value < 0.05 and fold change >= 2.
Transcripts in N2 animals that showed significantly decreased expression across all pathogens (S. epidermidis, P. rettgeri, P. aeruginosa, or S. aureus vs. OP50)
- WBPaper00062684:pathogen_upregulated_CB4856
DESeq2 (v.3.1.0), adjusted P-value < 0.05 and fold change >= 2.
Transcripts in CB4856 animals that showed significantly increased expression across all pathogens (S. epidermidis, P. rettgeri, P. aeruginosa, or S. aureus vs. OP50)
- WBPaper00062684:pathogen_upregulated_N2
DESeq2 (v.3.1.0), adjusted P-value < 0.05 and fold change >= 2.
Transcripts in N2 animals that showed significantly increased expression across all pathogens (S. epidermidis, P. rettgeri, P. aeruginosa, or S. aureus vs. OP50)
- WBPaper00062684:pathogen_downregulated_CB4856
DESeq2 (v.3.1.0), adjusted P-value < 0.05 and fold change >= 2.
Transcripts in CB4856 animals that showed significantly decreased expression across all pathogens (S. epidermidis, P. rettgeri, P. aeruginosa, or S. aureus vs. OP50)