WBPaper00056009:propionate_upregulated_vitamin-B12_downregulated

EBSeq, Fold change >= 1.5, adjusted p < 0.01. Transgenes that showed significantly decreased expression after N2 animals grew in 20 nM vitamin B12 (from L1 till L4) comparing to no drug treatment, and increased expression after N2 animals grew in 40 mM propionate + 20 nM vitamin B12, comparing to in 20 nM vitamin B12.

WBPaper00064750:1mg-nanoplastics_upregulated_protein

fold change >= 1.5 or <= 0.67 Proteins that showed significantly increased expression after exposure to 1mg per Liter 100 nm polystyrene nanoplastics (PS-NPs) for 48 hours.

WBPaper00064750:1mg-nanoplastics_downregulated_protein

fold change >= 1.5 or <= 0.67 Proteins that showed significantly decreased expression after exposure to 1mg per Liter 100 nm polystyrene nanoplastics (PS-NPs) for 48 hours.

WBPaper00064750:0.1mg-nanoplastics_upregulated_protein

fold change >= 1.5 or <= 0.67 Proteins that showed significantly increased expression after exposure to 0.1mg per Liter 100 nm polystyrene nanoplastics (PS-NPs) for 48 hours.

WBPaper00064750:10mg-nanoplastics_upregulated_protein

fold change >= 1.5 or <= 0.67 Proteins that showed significantly increased expression after exposure to 10mg per Liter 100 nm polystyrene nanoplastics (PS-NPs) for 48 hours.

WBPaper00064750:10mg-nanoplastics_downregulated_protein

fold change >= 1.5 or <= 0.67 Proteins that showed significantly decreased expression after exposure to 10mg per Liter 100 nm polystyrene nanoplastics (PS-NPs) for 48 hours.

WBPaper00064750:0.1mg-nanoplastics_downregulated_protein

fold change >= 1.5 or <= 0.67 Proteins that showed significantly decreased expression after exposure to 0.1mg per Liter 100 nm polystyrene nanoplastics (PS-NPs) for 48 hours.

WBPaper00041075:hcf-1(-)_skn-1(+)_downregulated

N.A. Reanalyzing previously published data.Authors compared the genes differentially expressed in hcf-1(pk924) mutant worms relative to N2 wild-type worms (referred to as hcf-1(-) profile) (Rizki et al., 2011) to those changed in wild-type worms treated with control RNAi relative to skn-1 RNAi (referred to as skn-1 (+) profile) (Oliveira et al., 2009). Genes that were down regulated in the absence of hcf-1 and the presence of skn-1.

WBPaper00041075:hcf-1(-)_skn-1(+)_upregulated

N.A. Reanalyzing previously published data.Authors compared the genes differentially expressed in hcf-1(pk924) mutant worms relative to N2 wild-type worms (referred to as hcf-1(-) profile) (Rizki et al., 2011) to those changed in wild-type worms treated with control RNAi relative to skn-1 RNAi (referred to as skn-1 (+) profile) (Oliveira et al., 2009). Genes that were up regulated in the absence of hcf-1 and the presence of skn-1.

WBPaper00056443:DietaryRestriction_downregulated

Bioconductor package edgeR, p < 0.05. Transcripts that showed significantly decreased expression after N2 animals were under dietary restriction (DR, OP50 OD = 0.1) from 3-day post L4 till 6-day post L4 adult hermaphrodite stage, comparing to under ad libtum (AL, OP50 OD = 3) condition.