WBPaper00040990:PA14_downregulated

Gene expression profiles obtained with microarrays were analyzed by a multi-class t-test using Significance Analysis of Microarrays (SAM), implemented as part of the TMEV software package. Based on T statistics the test retrieves genes with a T value above a cutoff score estimated to give the desired false discovery rate (selected to be 10%). Genes with expression level repressed by bacteria strain PA14.

WBPaper00040990:PA14_upregulated

Gene expression profiles obtained with microarrays were analyzed by a multi-class t-test using Significance Analysis of Microarrays (SAM), implemented as part of the TMEV software package. Based on T statistics the test retrieves genes with a T value above a cutoff score estimated to give the desired false discovery rate (selected to be 10%). Genes with expression level induced by bacteria strain PA14.

WBPaper00029437:rde-4_upregulated

Statistical t-test: P < 0.05 for rde-4(-/-) and rde-1(-/-) analyses; P < 0.01 for dcr-1(-/-) analysis with a threshold of 1.5-fold misregulation. Genes upregulated in rde-4(-/-) adult animals by at least 1.5 fold and P < 0.05, as determined by a multisample t-test.

WBPaper00028789:PA14_vs_OP50_downregulated_8hr

At least 2 fold and P < 0.01, as determined by a t-test. Genes downregulated in worms grown on P. aeruginosa PA14 as compared to worms grown on OP50 for 8 hours by at least 2 fold and P < 0.01, as determined by a t-test.

WBPaper00028789:PA14_vs_OP50_upregulated_8hr

At least 2 fold and P < 0.01, as determined by a t-test. Genes upregulated in worms grown on P. aeruginosa PA14 as compared to worms grown on OP50 for 8 hours by at least 2 fold and P < 0.01, as determined by a t-test.

WBPaper00028789:PA14_vs_OP50_upregulated_4hr

At least 2 fold and P < 0.01, as determined by a t-test. Genes upregulated in worms grown on P. aeruginosa PA14 as compared to worms grown on OP50 for 4 hours by at least 2 fold and P < 0.01, as determined by a t-test.

WBPaper00028789:PA14_vs_OP50_downregulated_4hr

At least 2 fold and P < 0.01, as determined by a t-test. Genes downregulated in worms grown on P. aeruginosa PA14 as compared to worms grown on OP50 for 4 hours by at least 2 fold and P < 0.01, as determined by a t-test.

WBPaper00029437:rde-1_downregulated

Statistical t-test: P < 0.05 for rde-4(-/-) and rde-1(-/-) analyses; P < 0.01 for dcr-1(-/-) analysis with a threshold of 1.5-fold misregulation. Genes downregulated in rde-1(-/-) adult animals by at least 1.5 fold and P < 0.05, as determined by a multisample t-test.

WBPaper00029437:rde-1_upregulated

Statistical t-test: P < 0.05 for rde-4(-/-) and rde-1(-/-) analyses; P < 0.01 for dcr-1(-/-) analysis with a threshold of 1.5-fold misregulation. Genes upregulated in rde-1(-/-) adult animals by at least 1.5 fold and P < 0.05, as determined by a multisample t-test.

WBPaper00029437:rde-4_downregulated

Statistical t-test: P < 0.05 for rde-4(-/-) and rde-1(-/-) analyses; P < 0.01 for dcr-1(-/-) analysis with a threshold of 1.5-fold misregulation. Genes downregulated in rde-4(-/-) adult animals by at least 1.5 fold and P < 0.05, as determined by a multisample t-test.